cat.Dataset.prepare

Dataset.prepare(group_by: str, gene_symbol_field: str | None = None, save_path: str | None = None) → None

Prepares dataset for CAT analysis

Parameters:

• group_by (str) – Column in obs

• gene_symbol_field (str | None, optional) – Column in var where genes are gene symbols, by default None

• save_path (str, optional) – Path to safe processed dataset in anndata format, by default “./tmp”